| 1 | /* --------------------- */ |
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| 2 | /* --- histogramNR.c --- */ |
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| 3 | /* --------------------- */ |
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| 4 | |
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| 5 | // Copyright (c) 2013-2014 Lionel Lacassagne, All Rights Reserved |
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| 6 | // Laboratoire de Recherche en Informatique |
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| 7 | // Universite Paris-Sud / CNRS |
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| 8 | |
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| 9 | #include <stdio.h> |
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| 10 | #include <math.h> |
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| 11 | #include <stdlib.h> |
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| 12 | |
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| 13 | #ifdef CLI |
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| 14 | #include "nrc_os_config.h" |
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| 15 | #include "nrc.h" |
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| 16 | #endif |
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| 17 | |
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| 18 | #include "lutNR.h" |
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| 19 | #include "histogramNR.h" |
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| 20 | |
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| 21 | /* ------------------------------------- */ |
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| 22 | uint32* alloc_ui32histogram(int i0, int i1) |
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| 23 | /* ------------------------------------- */ |
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| 24 | { |
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| 25 | return ui32vector(i0, i1); |
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| 26 | } |
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| 27 | /* -------------------------------------------- */ |
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| 28 | void zero_ui32histogram(uint32 *H, int i0, int i1) |
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| 29 | /* -------------------------------------------- */ |
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| 30 | { |
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| 31 | zero_ui32vector(H, i0, i1); |
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| 32 | } |
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| 33 | /* ------------------------------------------------------------------------- */ |
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| 34 | void display_ui32histogram(uint32 *H, int i0, int i1, char *format, char *name) |
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| 35 | /* ------------------------------------------------------------------------- */ |
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| 36 | { |
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| 37 | display_ui32vector(H, i0, i1, format, name); |
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| 38 | } |
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| 39 | /* -------------------------------------------- */ |
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| 40 | void free_ui32histogram(uint32* H, int i0, int i1) |
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| 41 | /* -------------------------------------------- */ |
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| 42 | { |
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| 43 | free_ui32vector(H, i0, i1); |
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| 44 | } |
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| 45 | /* ---------------------------------------------------------------------------- */ |
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| 46 | void ui32histogram_ui8matrix(uint8 **X, int i0, int i1, int j0, int j1, uint32 *H) |
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| 47 | /* ---------------------------------------------------------------------------- */ |
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| 48 | { |
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| 49 | int i, j; |
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| 50 | |
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| 51 | for(i=i0; i<=i1; i++) { |
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| 52 | for(j=j0; j<=j1; j++) { |
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| 53 | H[X[i][j]]++; |
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| 54 | } |
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| 55 | } |
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| 56 | } |
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| 57 | /* ------------------------------------------------------ */ |
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| 58 | void cumsum_ui32vector(uint32 *X, int i0, int i1, uint32 *Y) |
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| 59 | /* ------------------------------------------------------ */ |
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| 60 | { |
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| 61 | // Matlab name |
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| 62 | int i; |
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| 63 | |
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| 64 | Y[i0] = X[i0]; |
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| 65 | |
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| 66 | for(i=i0+1; i<=i1; i++) { |
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| 67 | Y[i] = Y[i-1] + X[i]; |
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| 68 | } |
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| 69 | } |
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| 70 | /* ------------------------------------------------------------------------------------ */ |
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| 71 | void mulfrac_ui32histogram_ui8lut(uint32 *X, int i0, int i1, uint32 a, uint32 b, uint8 *Y) |
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| 72 | /* ------------------------------------------------------------------------------------ */ |
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| 73 | { |
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| 74 | int i; |
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| 75 | for(i=i0; i<=i1; i++) { |
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| 76 | Y[i] = (a * X[i] + b/2) / b; |
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| 77 | } |
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| 78 | } |
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| 79 | /* ------------------------------------------------------------------------------------- */ |
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| 80 | void ui32histogram_equalize_ui8matrix(uint8 **X, int i0, int i1, int j0, int j1, uint8 **Y) |
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| 81 | /* ------------------------------------------------------------------------------------- */ |
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| 82 | { |
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| 83 | uint32 *H, *HC; |
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| 84 | uint8 *L; |
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| 85 | int size = (i1-i0+1)*(j1-j0+1); |
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| 86 | |
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| 87 | L = alloc_ui8lut(); zero_ui8lut(L); |
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| 88 | |
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| 89 | H = alloc_ui32histogram(0, 255); zero_ui32histogram(H, 0, 255); |
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| 90 | HC = alloc_ui32histogram(0, 255); zero_ui32histogram(HC, 0, 255); |
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| 91 | |
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| 92 | ui32histogram_ui8matrix(X, i0, i1, j0, j1, H); |
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| 93 | cumsum_ui32vector(H, 0, 255, HC); |
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| 94 | mulfrac_ui32histogram_ui8lut(HC, 0, 255, 255, size, L); |
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| 95 | apply_ui8lut(X, i0, i1, j0, j1, L, Y); |
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| 96 | |
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| 97 | free_ui32histogram(H, 0, 255); |
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| 98 | free_ui32histogram(HC, 0, 255); |
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| 99 | free_ui8lut(L); |
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| 100 | } |
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| 101 | /* ---------------------------------------------------------------------- */ |
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| 102 | int calc_otsu_threshold_ui8matrix(uint8 **X, int i0, int i1, int j0, int j1) |
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| 103 | /* ---------------------------------------------------------------------- */ |
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| 104 | { |
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| 105 | int threshold; |
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| 106 | uint32 *H; |
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| 107 | H = alloc_ui32histogram(0, 255); |
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| 108 | zero_ui32histogram(H, 0, 255); |
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| 109 | ui32histogram_ui8matrix(X, i0, i1, j0, j1, H); |
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| 110 | threshold = calc_otsu_threshold_ui32vector(H, 1, 255); |
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| 111 | free_ui32histogram(H, 0, 255); |
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| 112 | |
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| 113 | return threshold; |
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| 114 | } |
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| 115 | /* ---------------------------------- */ |
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| 116 | float32 somme(uint32 *X, int i0, int i1) |
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| 117 | /* ---------------------------------- */ |
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| 118 | { |
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| 119 | int i; |
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| 120 | float32 s = 0; |
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| 121 | for(i=i0; i<=i1; i++) { |
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| 122 | s += X[i]; |
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| 123 | } |
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| 124 | return s; |
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| 125 | } |
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| 126 | /* ----------------------------------------- */ |
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| 127 | float32 somme_prod_i(uint32 *X, int i0, int i1) |
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| 128 | /* ----------------------------------------- */ |
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| 129 | { |
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| 130 | int i; |
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| 131 | float32 s = 0; |
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| 132 | for(i=i0; i<=i1; i++) { |
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| 133 | s += X[i] * i; |
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| 134 | } |
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| 135 | return s; |
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| 136 | } |
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| 137 | /* ----------------------------------------- */ |
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| 138 | float32 somme_prod_i2(uint32 *X, int i0, int i1) |
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| 139 | /* ----------------------------------------- */ |
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| 140 | { |
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| 141 | int i; |
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| 142 | float32 s = 0; |
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| 143 | for(i=i0; i<=i1; i++) { |
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| 144 | s += X[i] * i*i; |
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| 145 | } |
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| 146 | return s; |
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| 147 | } |
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| 148 | /* --------------------------------------------------------- */ |
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| 149 | int calc_otsu_threshold_v0_ui32vector(uint32 *H, int i0, int i1) |
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| 150 | /* ---------------------------------------------------------- */ |
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| 151 | { |
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| 152 | // http://www.labbookpages.co.uk/software/imgProc/otsuThreshold.html |
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| 153 | // slow version (exact implementation of Otsu's original algorithm |
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| 154 | |
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| 155 | int t, threshold = i0; |
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| 156 | |
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| 157 | float32 Stot; |
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| 158 | float32 bS, bSx, bSxx; |
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| 159 | float32 fS, fSx, fSxx; |
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| 160 | |
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| 161 | float32 sb, wb, ub, vb; |
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| 162 | float32 sf, wf, uf, vf; |
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| 163 | |
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| 164 | float32 v, vmin = 1e38f; |
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| 165 | |
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| 166 | Stot = somme(H, i0, i1); |
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| 167 | |
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| 168 | for(t=i0; t<=i1; t++) { |
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| 169 | |
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| 170 | bS = somme (H, i0, t-1); fS = somme (H, t, i1); |
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| 171 | bSx = somme_prod_i (H, i0, t-1); fSx = somme_prod_i (H, t, i1); |
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| 172 | bSxx = somme_prod_i2(H, i0, t-1); fSxx = somme_prod_i2(H, t, i1); |
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| 173 | |
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| 174 | if((bS == 0.0f) || (fS == 0.0f)) continue; |
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| 175 | |
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| 176 | sb = bS; |
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| 177 | sf = fS; |
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| 178 | |
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| 179 | wb = sb / Stot; |
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| 180 | wf = sf / Stot; |
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| 181 | |
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| 182 | ub = bSx / bS; |
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| 183 | uf = fSx / fS; |
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| 184 | |
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| 185 | vb = (bS*bSxx - bSx*bSx) / (bS*bS); |
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| 186 | vf = (fS*fSxx - fSx*fSx) / (fS*fS); |
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| 187 | |
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| 188 | v = wb * vb + wf * vf; |
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| 189 | |
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| 190 | //printf("t = %d v = %.4f\n", t, v); |
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| 191 | if(v < vmin) { |
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| 192 | vmin = v; |
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| 193 | threshold = t; |
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| 194 | } |
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| 195 | } |
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| 196 | return threshold; |
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| 197 | } |
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| 198 | /* ---------------------------------------------------------- */ |
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| 199 | int calc_otsu_threshold_v1_ui32vector(uint32 *H, int i0, int i1) |
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| 200 | /* ---------------------------------------------------------- */ |
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| 201 | { |
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| 202 | // http://www.labbookpages.co.uk/software/imgProc/otsuThreshold.html |
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| 203 | // fast version |
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| 204 | |
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| 205 | int t, threshold = i0; |
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| 206 | |
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| 207 | float32 S = 0.0f; |
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| 208 | float32 Sx = 0.0f; // total Sums |
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| 209 | |
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| 210 | float32 varBetween, varMax = 0.0f; |
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| 211 | float32 sB = 0.0f, sF = 0.0f; |
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| 212 | float32 wB = 0.0f, wF = 0.0f; // weight Background, weight Foreground |
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| 213 | float32 mB, mF; // mean Background, mean Foreground |
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| 214 | |
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| 215 | for(t=i0; t<=i1; t++) { |
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| 216 | S += H[t]; |
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| 217 | Sx += H[t] * t; |
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| 218 | } |
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| 219 | |
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| 220 | for(t=i0; t<=i1; t++) { |
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| 221 | wB += H[t]; |
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| 222 | if(wB == 0) continue; |
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| 223 | |
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| 224 | wF = S - wB; |
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| 225 | if(wF == 0) continue; |
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| 226 | |
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| 227 | sB += H[t] * t; |
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| 228 | sF = Sx - sB; |
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| 229 | |
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| 230 | wB /= S; |
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| 231 | wF /= S; |
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| 232 | |
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| 233 | mB = sB / wB; |
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| 234 | mF = sF / wF; |
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| 235 | |
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| 236 | varBetween = wB * wF * (mB - mF)*(mB - mF); |
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| 237 | printf("varBetween[%d] = %.4f\n", t, varBetween); |
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| 238 | |
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| 239 | if(varBetween > varMax) { |
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| 240 | varMax = varBetween; |
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| 241 | threshold = t; |
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| 242 | } |
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| 243 | } |
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| 244 | return threshold; |
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| 245 | } |
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| 246 | /* ------------------------------------------------------- */ |
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| 247 | int calc_otsu_threshold_ui32vector(uint32 *H, int i0, int i1) |
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| 248 | /* ------------------------------------------------------- */ |
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| 249 | { |
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| 250 | calc_otsu_threshold_v0_ui32vector(H, i0, i1); |
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| 251 | return 0; |
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| 252 | } |
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